Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3457375..3457507 | Replicon | chromosome |
| Accession | NZ_CP099542 | ||
| Organism | Pantoea ananatis strain JT8-6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3457375..3457472 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3457375..3457507 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG830_RS16310 (NG830_16285) | 3452593..3454215 | - | 1623 | WP_064366978.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
| NG830_RS16315 (NG830_16290) | 3454496..3455200 | + | 705 | WP_047714948.1 | GntR family transcriptional regulator | - |
| NG830_RS16320 (NG830_16295) | 3455691..3457235 | + | 1545 | WP_064366977.1 | methyl-accepting chemotaxis protein | - |
| - | 3457375..3457472 | - | 98 | - | - | Toxin |
| - | 3457375..3457507 | + | 133 | - | - | Antitoxin |
| NG830_RS16325 (NG830_16300) | 3457587..3457934 | - | 348 | WP_064366976.1 | YebY family protein | - |
| NG830_RS16330 (NG830_16305) | 3457962..3458837 | - | 876 | WP_081046471.1 | copper homeostasis membrane protein CopD | - |
| NG830_RS16335 (NG830_16310) | 3458842..3459216 | - | 375 | WP_064366975.1 | copper homeostasis periplasmic binding protein CopC | - |
| NG830_RS16340 (NG830_16315) | 3459367..3459597 | + | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| NG830_RS16345 (NG830_16320) | 3459597..3460268 | + | 672 | WP_173647306.1 | exodeoxyribonuclease X | - |
| NG830_RS16350 (NG830_16325) | 3460252..3462324 | - | 2073 | WP_064366973.1 | prolyl oligopeptidase family serine peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T249100 NZ_CP099542:c3457472-3457375 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATCAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT249100 NZ_CP099542:3457375-3457507 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTGA
TAGAGGCTTTCGCCTTGCTTTTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
