Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972653..1972798 | Replicon | chromosome |
| Accession | NZ_CP099522 | ||
| Organism | Klebsiella pneumoniae strain SZS128 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972689..1972791 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972653..1972798 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG894_RS09685 (NG894_09670) | 1967783..1969843 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NG894_RS09690 (NG894_09675) | 1969847..1970506 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NG894_RS09695 (NG894_09680) | 1970585..1970815 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NG894_RS09700 (NG894_09685) | 1970928..1971302 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NG894_RS09705 (NG894_09690) | 1971306..1972175 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NG894_RS09710 (NG894_09695) | 1972192..1972530 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1972653..1972798 | - | 146 | - | - | Antitoxin |
| - | 1972689..1972791 | + | 103 | - | - | Toxin |
| NG894_RS09715 (NG894_09700) | 1973166..1973309 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NG894_RS09720 (NG894_09705) | 1973414..1974382 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NG894_RS09725 (NG894_09710) | 1974539..1975192 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NG894_RS09730 (NG894_09715) | 1975189..1975380 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NG894_RS09735 (NG894_09720) | 1975478..1975717 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NG894_RS09740 (NG894_09725) | 1975833..1977266 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249060 NZ_CP099522:1972689-1972791 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT249060 NZ_CP099522:c1972798-1972653 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
