Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3529195..3529363 | Replicon | chromosome |
| Accession | NZ_CP099513 | ||
| Organism | Klebsiella sp. ZYC-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3529202..3529305 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3529195..3529363 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDO58_RS16515 (NDO58_16485) | 3524469..3524987 | + | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
| NDO58_RS16520 (NDO58_16490) | 3525006..3525770 | + | 765 | WP_004134823.1 | fimbria/pilus periplasmic chaperone | - |
| NDO58_RS16525 (NDO58_16495) | 3525773..3528103 | + | 2331 | WP_286453897.1 | fimbria/pilus outer membrane usher protein | - |
| NDO58_RS16530 (NDO58_16500) | 3528118..3529077 | + | 960 | WP_049085573.1 | spore coat protein U domain-containing protein | - |
| - | 3529195..3529363 | + | 169 | - | - | Antitoxin |
| - | 3529202..3529305 | - | 104 | - | - | Toxin |
| NDO58_RS16535 (NDO58_16505) | 3529462..3529800 | - | 339 | WP_004103344.1 | YebY family protein | - |
| NDO58_RS16540 (NDO58_16510) | 3529817..3530686 | - | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| NDO58_RS16545 (NDO58_16515) | 3530691..3531065 | - | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| NDO58_RS16550 (NDO58_16520) | 3531201..3531431 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| NDO58_RS16555 (NDO58_16525) | 3531510..3532169 | + | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| NDO58_RS16560 (NDO58_16530) | 3532176..3534236 | - | 2061 | WP_098363186.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249049 NZ_CP099513:c3529305-3529202 [Klebsiella sp. ZYC-1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT249049 NZ_CP099513:3529195-3529363 [Klebsiella sp. ZYC-1]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
