Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1080040..1080214 | Replicon | chromosome |
| Accession | NZ_CP099511 | ||
| Organism | Lelliottia amnigena strain P13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1080119..1080209 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1080040..1080214 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ01_RS05175 (NFJ01_05175) | 1076542..1077204 | - | 663 | WP_131487918.1 | exodeoxyribonuclease X | - |
| NFJ01_RS05180 (NFJ01_05180) | 1077229..1077885 | - | 657 | WP_252687664.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ01_RS05185 (NFJ01_05185) | 1077996..1078226 | - | 231 | WP_059179723.1 | DNA polymerase III subunit theta | - |
| NFJ01_RS05190 (NFJ01_05190) | 1078364..1078738 | + | 375 | WP_252687665.1 | CopC domain-containing protein YobA | - |
| NFJ01_RS05195 (NFJ01_05195) | 1078740..1079612 | + | 873 | WP_252687667.1 | copper homeostasis membrane protein CopD | - |
| NFJ01_RS05200 (NFJ01_05200) | 1079627..1079965 | + | 339 | WP_059179726.1 | YebY family protein | - |
| - | 1080040..1080214 | - | 175 | - | - | Antitoxin |
| - | 1080119..1080209 | + | 91 | - | - | Toxin |
| NFJ01_RS05205 (NFJ01_05205) | 1080368..1081309 | - | 942 | WP_252687669.1 | VirK/YbjX family protein | - |
| NFJ01_RS05210 (NFJ01_05210) | 1081477..1082121 | + | 645 | WP_239609121.1 | protein-serine/threonine phosphatase | - |
| NFJ01_RS05215 (NFJ01_05215) | 1082122..1082313 | - | 192 | WP_015959409.1 | YebW family protein | - |
| NFJ01_RS05220 (NFJ01_05220) | 1082418..1082657 | - | 240 | WP_015959408.1 | YebV family protein | - |
| NFJ01_RS05225 (NFJ01_05225) | 1082761..1084203 | - | 1443 | WP_252687672.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T249035 NZ_CP099511:1080119-1080209 [Lelliottia amnigena]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
Antitoxin
Download Length: 175 bp
>AT249035 NZ_CP099511:c1080214-1080040 [Lelliottia amnigena]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
