Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2958814..2958952 | Replicon | chromosome |
| Accession | NZ_CP099390 | ||
| Organism | Citrobacter braakii strain RHB02-E3-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2958814..2958917 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2958814..2958952 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ22_RS14635 (NFJ22_14625) | 2954472..2955860 | + | 1389 | WP_279264184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFJ22_RS14640 (NFJ22_14630) | 2955961..2956197 | + | 237 | WP_279264185.1 | YebV family protein | - |
| NFJ22_RS14645 (NFJ22_14635) | 2956300..2956491 | + | 192 | WP_016152779.1 | YebW family protein | - |
| NFJ22_RS14650 (NFJ22_14640) | 2956492..2957133 | - | 642 | WP_279263359.1 | protein-serine/threonine phosphatase | - |
| NFJ22_RS14655 (NFJ22_14645) | 2957211..2958491 | - | 1281 | WP_279263360.1 | hypothetical protein | - |
| - | 2958814..2958917 | - | 104 | - | - | Toxin |
| - | 2958814..2958952 | + | 139 | - | - | Antitoxin |
| NFJ22_RS14660 (NFJ22_14650) | 2959073..2959411 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ22_RS14665 (NFJ22_14655) | 2959432..2960304 | - | 873 | WP_279263361.1 | copper homeostasis membrane protein CopD | - |
| NFJ22_RS14670 (NFJ22_14660) | 2960308..2960682 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| NFJ22_RS14675 (NFJ22_14665) | 2960826..2961056 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ22_RS14680 (NFJ22_14670) | 2961163..2961819 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ22_RS14685 (NFJ22_14675) | 2961843..2962505 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248857 NZ_CP099390:c2958917-2958814 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248857 NZ_CP099390:2958814-2958952 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
