Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2854545..2854683 | Replicon | chromosome |
Accession | NZ_CP099389 | ||
Organism | Citrobacter braakii strain RHB02-E4-C01 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2854545..2854648 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2854545..2854683 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NFJ24_RS13660 | 2850608..2851996 | + | 1389 | WP_233616908.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
NFJ24_RS13665 | 2852097..2852333 | + | 237 | WP_029139506.1 | YebV family protein | - |
NFJ24_RS13670 | 2852436..2852627 | + | 192 | WP_016152779.1 | YebW family protein | - |
NFJ24_RS13675 | 2852628..2853269 | - | 642 | WP_141875078.1 | protein-serine/threonine phosphatase | - |
NFJ24_RS13680 | 2853360..2854190 | - | 831 | WP_103766187.1 | GIY-YIG nuclease family protein | - |
- | 2854545..2854648 | - | 104 | - | - | Toxin |
- | 2854545..2854683 | + | 139 | - | - | Antitoxin |
NFJ24_RS13685 | 2854804..2855142 | - | 339 | WP_003833793.1 | YebY family protein | - |
NFJ24_RS13690 | 2855163..2856035 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
NFJ24_RS13695 | 2856039..2856413 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
NFJ24_RS13700 | 2856557..2856787 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
NFJ24_RS13705 | 2856894..2857550 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
NFJ24_RS13710 | 2857574..2858236 | + | 663 | WP_181220539.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2845197..2931214 | 86017 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248846 NZ_CP099389:c2854648-2854545 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248846 NZ_CP099389:2854545-2854683 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT