Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2854545..2854683 Replicon chromosome
Accession NZ_CP099389
Organism Citrobacter braakii strain RHB02-E4-C01

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2854545..2854648 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2854545..2854683 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NFJ24_RS13660 2850608..2851996 + 1389 WP_233616908.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
NFJ24_RS13665 2852097..2852333 + 237 WP_029139506.1 YebV family protein -
NFJ24_RS13670 2852436..2852627 + 192 WP_016152779.1 YebW family protein -
NFJ24_RS13675 2852628..2853269 - 642 WP_141875078.1 protein-serine/threonine phosphatase -
NFJ24_RS13680 2853360..2854190 - 831 WP_103766187.1 GIY-YIG nuclease family protein -
- 2854545..2854648 - 104 - - Toxin
- 2854545..2854683 + 139 - - Antitoxin
NFJ24_RS13685 2854804..2855142 - 339 WP_003833793.1 YebY family protein -
NFJ24_RS13690 2855163..2856035 - 873 WP_049271209.1 copper homeostasis membrane protein CopD -
NFJ24_RS13695 2856039..2856413 - 375 WP_047415373.1 CopC domain-containing protein YobA -
NFJ24_RS13700 2856557..2856787 + 231 WP_003034925.1 DNA polymerase III subunit theta -
NFJ24_RS13705 2856894..2857550 + 657 WP_047415371.1 carbon-nitrogen hydrolase family protein -
NFJ24_RS13710 2857574..2858236 + 663 WP_181220539.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 2845197..2931214 86017


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T248846 NZ_CP099389:c2854648-2854545 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 139 bp

>AT248846 NZ_CP099389:2854545-2854683 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References