Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2816286..2816426 | Replicon | chromosome |
| Accession | NZ_CP099388 | ||
| Organism | Citrobacter braakii strain RHB03-E1-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2816288..2816391 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2816286..2816426 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ30_RS13395 (NFJ30_13385) | 2811704..2811886 | - | 183 | WP_169330206.1 | hypothetical protein | - |
| NFJ30_RS13400 (NFJ30_13390) | 2812202..2812375 | + | 174 | WP_169330207.1 | hypothetical protein | - |
| NFJ30_RS13405 (NFJ30_13395) | 2812736..2814064 | + | 1329 | WP_279273706.1 | hypothetical protein | - |
| NFJ30_RS13410 (NFJ30_13400) | 2814073..2814555 | + | 483 | WP_279273707.1 | hypothetical protein | - |
| NFJ30_RS13415 (NFJ30_13405) | 2814552..2814779 | + | 228 | WP_169330209.1 | hypothetical protein | - |
| NFJ30_RS13420 (NFJ30_13410) | 2814881..2815096 | + | 216 | WP_256935254.1 | excisionase | - |
| NFJ30_RS13425 (NFJ30_13415) | 2815074..2816153 | + | 1080 | WP_169330211.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2816286..2816426 | + | 141 | - | - | Antitoxin |
| - | 2816288..2816391 | - | 104 | - | - | Toxin |
| NFJ30_RS13430 (NFJ30_13420) | 2816547..2816885 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ30_RS13435 (NFJ30_13425) | 2816906..2817778 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| NFJ30_RS13440 (NFJ30_13430) | 2817782..2818156 | - | 375 | WP_049271207.1 | CopC domain-containing protein YobA | - |
| NFJ30_RS13445 (NFJ30_13435) | 2818300..2818530 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ30_RS13450 (NFJ30_13440) | 2818637..2819293 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ30_RS13455 (NFJ30_13445) | 2819317..2819979 | + | 663 | WP_049040232.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248835 NZ_CP099388:c2816391-2816288 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT248835 NZ_CP099388:2816286-2816426 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
