Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2915622..2915763 | Replicon | chromosome |
| Accession | NZ_CP099385 | ||
| Organism | Citrobacter braakii strain RHB09-SO-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2915625..2915728 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2915622..2915763 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ63_RS14060 (NFJ63_14055) | 2910974..2911114 | + | 141 | Protein_2763 | hypothetical protein | - |
| NFJ63_RS14065 (NFJ63_14060) | 2911160..2911498 | + | 339 | WP_279272063.1 | Rrf2 family transcriptional regulator | - |
| NFJ63_RS14070 (NFJ63_14065) | 2911640..2914111 | + | 2472 | WP_279272064.1 | exonuclease | - |
| NFJ63_RS14075 (NFJ63_14070) | 2914175..2914435 | + | 261 | WP_072211989.1 | excisionase | - |
| NFJ63_RS14080 (NFJ63_14075) | 2914413..2915492 | + | 1080 | WP_279272065.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2915622..2915763 | + | 142 | - | - | Antitoxin |
| - | 2915625..2915728 | - | 104 | - | - | Toxin |
| NFJ63_RS14085 (NFJ63_14080) | 2915884..2916222 | - | 339 | WP_075847181.1 | YebY family protein | - |
| NFJ63_RS14090 (NFJ63_14085) | 2916243..2917115 | - | 873 | WP_279272066.1 | copper homeostasis membrane protein CopD | - |
| NFJ63_RS14095 (NFJ63_14090) | 2917119..2917493 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| NFJ63_RS14100 (NFJ63_14095) | 2917637..2917867 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ63_RS14105 (NFJ63_14100) | 2917974..2918630 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ63_RS14110 (NFJ63_14105) | 2918654..2919316 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2867021..2991103 | 124082 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248801 NZ_CP099385:c2915728-2915625 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT248801 NZ_CP099385:2915622-2915763 [Citrobacter braakii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
