Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2775696..2775834 | Replicon | chromosome |
| Accession | NZ_CP099384 | ||
| Organism | Citrobacter braakii strain RHB13-SO-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2775696..2775799 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2775696..2775834 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ78_RS13230 | 2771354..2772742 | + | 1389 | WP_279262927.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFJ78_RS13235 | 2772843..2773079 | + | 237 | WP_029139506.1 | YebV family protein | - |
| NFJ78_RS13240 | 2773182..2773373 | + | 192 | WP_049271212.1 | YebW family protein | - |
| NFJ78_RS13245 | 2773374..2774015 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| NFJ78_RS13250 | 2774093..2775373 | - | 1281 | WP_019076586.1 | hypothetical protein | - |
| - | 2775696..2775799 | - | 104 | - | - | Toxin |
| - | 2775696..2775834 | + | 139 | - | - | Antitoxin |
| NFJ78_RS13255 | 2775955..2776293 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ78_RS13260 | 2776314..2777186 | - | 873 | WP_046276427.1 | copper homeostasis membrane protein CopD | - |
| NFJ78_RS13265 | 2777190..2777564 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| NFJ78_RS13270 | 2777708..2777938 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ78_RS13275 | 2778045..2778701 | + | 657 | WP_200015344.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ78_RS13280 | 2778725..2779387 | + | 663 | WP_275262156.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248788 NZ_CP099384:c2775799-2775696 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248788 NZ_CP099384:2775696-2775834 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
