Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2943164..2943304 | Replicon | chromosome |
| Accession | NZ_CP099382 | ||
| Organism | Citrobacter braakii strain RHB14-SO-C08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2943166..2943269 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2943164..2943304 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ83_RS14360 | 2940331..2941416 | + | 1086 | WP_191220114.1 | RecT family recombinase | - |
| NFJ83_RS14365 | 2941455..2941697 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| NFJ83_RS14370 | 2941762..2942034 | + | 273 | WP_016156226.1 | excisionase | - |
| NFJ83_RS14375 | 2942003..2943088 | + | 1086 | WP_191220115.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2943164..2943304 | + | 141 | - | - | Antitoxin |
| - | 2943166..2943269 | - | 104 | - | - | Toxin |
| NFJ83_RS14380 | 2943425..2943763 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ83_RS14385 | 2943784..2944656 | - | 873 | WP_103283918.1 | copper homeostasis membrane protein CopD | - |
| NFJ83_RS14390 | 2944660..2945034 | - | 375 | WP_103283919.1 | CopC domain-containing protein YobA | - |
| NFJ83_RS14395 | 2945178..2945408 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ83_RS14400 | 2945515..2946171 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ83_RS14405 | 2946195..2946857 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2897597..2948938 | 51341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248776 NZ_CP099382:c2943269-2943166 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT248776 NZ_CP099382:2943164-2943304 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
