Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2887167..2887310 | Replicon | chromosome |
| Accession | NZ_CP099381 | ||
| Organism | Citrobacter braakii strain RHB16-E2-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2887172..2887275 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2887167..2887310 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ84_RS13975 (NFJ84_13960) | 2882797..2884218 | + | 1422 | WP_227021106.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFJ84_RS13980 (NFJ84_13965) | 2884319..2884555 | + | 237 | WP_029139506.1 | YebV family protein | - |
| NFJ84_RS13985 (NFJ84_13970) | 2884658..2884849 | + | 192 | WP_016152779.1 | YebW family protein | - |
| NFJ84_RS13990 (NFJ84_13975) | 2884850..2885491 | - | 642 | WP_104652109.1 | protein-serine/threonine phosphatase | - |
| NFJ84_RS13995 (NFJ84_13980) | 2885569..2886849 | - | 1281 | WP_279265049.1 | hypothetical protein | - |
| - | 2887167..2887310 | + | 144 | - | - | Antitoxin |
| - | 2887172..2887275 | - | 104 | - | - | Toxin |
| NFJ84_RS14000 (NFJ84_13985) | 2887431..2887769 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ84_RS14005 (NFJ84_13990) | 2887790..2888662 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| NFJ84_RS14010 (NFJ84_13995) | 2888666..2889040 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| NFJ84_RS14015 (NFJ84_14000) | 2889184..2889414 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ84_RS14020 (NFJ84_14005) | 2889521..2890177 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ84_RS14025 (NFJ84_14010) | 2890201..2890863 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2882689..2961954 | 79265 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248766 NZ_CP099381:c2887275-2887172 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248766 NZ_CP099381:2887167-2887310 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
