Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2751574..2751716 | Replicon | chromosome |
| Accession | NZ_CP099379 | ||
| Organism | Citrobacter braakii strain RHB16-SO-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2751578..2751681 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2751574..2751716 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ89_RS13140 (NFJ89_13135) | 2747055..2748170 | + | 1116 | Protein_2578 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| NFJ89_RS13145 (NFJ89_13140) | 2748182..2749294 | + | 1113 | WP_065554608.1 | RecT family recombinase | - |
| NFJ89_RS13150 (NFJ89_13145) | 2749329..2749880 | + | 552 | WP_065554607.1 | hypothetical protein | - |
| NFJ89_RS13155 (NFJ89_13150) | 2749867..2750109 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| NFJ89_RS13160 (NFJ89_13155) | 2750174..2750446 | + | 273 | WP_074422879.1 | excisionase | - |
| NFJ89_RS13165 (NFJ89_13160) | 2750415..2751500 | + | 1086 | WP_065554606.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2751574..2751716 | + | 143 | - | - | Antitoxin |
| - | 2751578..2751681 | - | 104 | - | - | Toxin |
| NFJ89_RS13170 (NFJ89_13165) | 2751837..2752175 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ89_RS13175 (NFJ89_13170) | 2752196..2753068 | - | 873 | WP_065554605.1 | copper homeostasis membrane protein CopD | - |
| NFJ89_RS13180 (NFJ89_13175) | 2753072..2753446 | - | 375 | WP_016152775.1 | CopC domain-containing protein YobA | - |
| NFJ89_RS13185 (NFJ89_13180) | 2753590..2753820 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ89_RS13190 (NFJ89_13185) | 2753927..2754583 | + | 657 | WP_283090745.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ89_RS13195 (NFJ89_13190) | 2754607..2755269 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2730229..2757350 | 27121 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248754 NZ_CP099379:c2751681-2751578 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT248754 NZ_CP099379:2751574-2751716 [Citrobacter braakii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
