Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079692..2079830 | Replicon | chromosome |
| Accession | NZ_CP099376 | ||
| Organism | Citrobacter braakii strain RHB23-SO-C04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079727..2079830 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079692..2079830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK21_RS09840 | 2076139..2076801 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| NFK21_RS09845 | 2076825..2077481 | - | 657 | WP_049271204.1 | carbon-nitrogen hydrolase family protein | - |
| NFK21_RS09850 | 2077588..2077818 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFK21_RS09855 | 2077962..2078336 | + | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| NFK21_RS09860 | 2078340..2079212 | + | 873 | WP_046276427.1 | copper homeostasis membrane protein CopD | - |
| NFK21_RS09865 | 2079233..2079571 | + | 339 | WP_187258833.1 | YebY family protein | - |
| - | 2079692..2079830 | - | 139 | - | - | Antitoxin |
| - | 2079727..2079830 | + | 104 | - | - | Toxin |
| NFK21_RS09870 | 2080153..2081433 | + | 1281 | WP_279266960.1 | hypothetical protein | - |
| NFK21_RS09875 | 2081511..2082152 | + | 642 | WP_279266961.1 | protein-serine/threonine phosphatase | - |
| NFK21_RS09880 | 2082153..2082344 | - | 192 | WP_016152779.1 | YebW family protein | - |
| NFK21_RS09885 | 2082447..2082683 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFK21_RS09890 | 2082784..2084172 | - | 1389 | WP_279267034.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248720 NZ_CP099376:2079727-2079830 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248720 NZ_CP099376:c2079830-2079692 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
