Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2960448..2960586 | Replicon | chromosome |
| Accession | NZ_CP099375 | ||
| Organism | Citrobacter braakii strain RHB25-E4-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2960448..2960551 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2960448..2960586 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK28_RS14485 | 2956511..2957899 | + | 1389 | WP_053389829.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFK28_RS14490 | 2958000..2958236 | + | 237 | WP_029139506.1 | YebV family protein | - |
| NFK28_RS14495 | 2958339..2958530 | + | 192 | WP_016152779.1 | YebW family protein | - |
| NFK28_RS14500 | 2958531..2959172 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| NFK28_RS14505 | 2959263..2960093 | - | 831 | WP_016152777.1 | GIY-YIG nuclease family protein | - |
| - | 2960448..2960551 | - | 104 | - | - | Toxin |
| - | 2960448..2960586 | + | 139 | - | - | Antitoxin |
| NFK28_RS14510 | 2960707..2961045 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFK28_RS14515 | 2961066..2961938 | - | 873 | WP_053389206.1 | copper homeostasis membrane protein CopD | - |
| NFK28_RS14520 | 2961942..2962316 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| NFK28_RS14525 | 2962460..2962690 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFK28_RS14530 | 2962797..2963453 | + | 657 | WP_053389207.1 | carbon-nitrogen hydrolase family protein | - |
| NFK28_RS14535 | 2963477..2964139 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2951100..2966220 | 15120 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248706 NZ_CP099375:c2960551-2960448 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248706 NZ_CP099375:2960448-2960586 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
