Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2887207..2887345 | Replicon | chromosome |
| Accession | NZ_CP099374 | ||
| Organism | Citrobacter braakii strain RHB25-SO-C06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2887207..2887310 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2887207..2887345 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK30_RS13925 | 2882865..2884253 | + | 1389 | WP_223870134.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFK30_RS13930 | 2884354..2884590 | + | 237 | WP_029139506.1 | YebV family protein | - |
| NFK30_RS13935 | 2884693..2884884 | + | 192 | WP_016152779.1 | YebW family protein | - |
| NFK30_RS13940 | 2884885..2885526 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| NFK30_RS13945 | 2885604..2886884 | - | 1281 | WP_159137103.1 | hypothetical protein | - |
| - | 2887207..2887310 | - | 104 | - | - | Toxin |
| - | 2887207..2887345 | + | 139 | - | - | Antitoxin |
| NFK30_RS13950 | 2887466..2887804 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFK30_RS13955 | 2887825..2888697 | - | 873 | WP_109017734.1 | copper homeostasis membrane protein CopD | - |
| NFK30_RS13960 | 2888701..2889075 | - | 375 | WP_109017733.1 | CopC domain-containing protein YobA | - |
| NFK30_RS13965 | 2889219..2889449 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFK30_RS13970 | 2889556..2890212 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| NFK30_RS13975 | 2890236..2890898 | + | 663 | WP_049040232.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2882724..2967801 | 85077 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248692 NZ_CP099374:c2887310-2887207 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT248692 NZ_CP099374:2887207-2887345 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
