Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2273227..2273370 | Replicon | chromosome |
| Accession | NZ_CP099373 | ||
| Organism | Citrobacter portucalensis strain RHB38-SO-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2273262..2273365 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2273227..2273370 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK58_RS10815 (NFK58_10845) | 2269674..2270336 | - | 663 | WP_079939895.1 | exodeoxyribonuclease X | - |
| NFK58_RS10820 (NFK58_10850) | 2270360..2271016 | - | 657 | WP_079939896.1 | carbon-nitrogen hydrolase family protein | - |
| NFK58_RS10825 (NFK58_10855) | 2271123..2271353 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFK58_RS10830 (NFK58_10860) | 2271497..2271871 | + | 375 | WP_191228590.1 | CopC domain-containing protein YobA | - |
| NFK58_RS10835 (NFK58_10865) | 2271875..2272747 | + | 873 | WP_191228591.1 | copper homeostasis membrane protein CopD | - |
| NFK58_RS10840 (NFK58_10870) | 2272768..2273106 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2273227..2273370 | - | 144 | - | - | Antitoxin |
| - | 2273262..2273365 | + | 104 | - | - | Toxin |
| NFK58_RS10845 (NFK58_10875) | 2273519..2274160 | + | 642 | WP_191228592.1 | protein-serine/threonine phosphatase | - |
| NFK58_RS10850 (NFK58_10880) | 2274161..2274352 | - | 192 | WP_003034941.1 | YebW family protein | - |
| NFK58_RS10855 (NFK58_10885) | 2274455..2274691 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFK58_RS10860 (NFK58_10890) | 2274792..2276180 | - | 1389 | WP_223124084.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248678 NZ_CP099373:2273262-2273365 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248678 NZ_CP099373:c2273370-2273227 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
