Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2211772..2211915 | Replicon | chromosome |
| Accession | NZ_CP099370 | ||
| Organism | Citrobacter portucalensis strain RHB40-E3-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2211807..2211910 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2211772..2211915 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK62_RS10910 | 2208219..2208881 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| NFK62_RS10915 | 2208905..2209561 | - | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| NFK62_RS10920 | 2209668..2209898 | - | 231 | WP_279275843.1 | DNA polymerase III subunit theta | - |
| NFK62_RS10925 | 2210042..2210416 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| NFK62_RS10930 | 2210420..2211292 | + | 873 | WP_279275844.1 | copper homeostasis membrane protein CopD | - |
| NFK62_RS10935 | 2211313..2211651 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2211772..2211915 | - | 144 | - | - | Antitoxin |
| - | 2211807..2211910 | + | 104 | - | - | Toxin |
| NFK62_RS10940 | 2212064..2212705 | + | 642 | WP_003833791.1 | protein-serine/threonine phosphatase | - |
| NFK62_RS10945 | 2212706..2212897 | - | 192 | WP_003034941.1 | YebW family protein | - |
| NFK62_RS10950 | 2213000..2213236 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFK62_RS10955 | 2213337..2214725 | - | 1389 | WP_279275957.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2143958..2220132 | 76174 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248667 NZ_CP099370:2211807-2211910 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248667 NZ_CP099370:c2211915-2211772 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
