Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2050895..2051035 | Replicon | chromosome |
| Accession | NZ_CP099366 | ||
| Organism | Citrobacter braakii strain RHB41-E2-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2050930..2051033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2050895..2051035 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK67_RS09845 (NFK67_09840) | 2047342..2048004 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| NFK67_RS09850 (NFK67_09845) | 2048028..2048684 | - | 657 | WP_016152774.1 | carbon-nitrogen hydrolase family protein | - |
| NFK67_RS09855 (NFK67_09850) | 2048791..2049021 | - | 231 | WP_279267617.1 | DNA polymerase III subunit theta | - |
| NFK67_RS09860 (NFK67_09855) | 2049165..2049539 | + | 375 | WP_279267618.1 | CopC domain-containing protein YobA | - |
| NFK67_RS09865 (NFK67_09860) | 2049543..2050415 | + | 873 | WP_053389206.1 | copper homeostasis membrane protein CopD | - |
| NFK67_RS09870 (NFK67_09865) | 2050436..2050774 | + | 339 | WP_279267619.1 | YebY family protein | - |
| - | 2050895..2051035 | - | 141 | - | - | Antitoxin |
| - | 2050930..2051033 | + | 104 | - | - | Toxin |
| NFK67_RS09875 (NFK67_09870) | 2051388..2052218 | + | 831 | WP_279267620.1 | GIY-YIG nuclease family protein | - |
| NFK67_RS09880 (NFK67_09875) | 2052309..2052950 | + | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| NFK67_RS09885 (NFK67_09880) | 2052951..2053142 | - | 192 | WP_279267621.1 | YebW family protein | - |
| NFK67_RS09890 (NFK67_09885) | 2053245..2053481 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFK67_RS09895 (NFK67_09890) | 2053582..2054970 | - | 1389 | WP_279267699.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248647 NZ_CP099366:2050930-2051033 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT248647 NZ_CP099366:c2051035-2050895 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
