Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-DnaT
Location 571143..571662 Replicon chromosome
Accession NZ_CP099366
Organism Citrobacter braakii strain RHB41-E2-C02

Toxin (Protein)


Gene name relE Uniprot ID A0A8I0G602
Locus tag NFK67_RS02820 Protein ID WP_047414720.1
Coordinates 571381..571662 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NFK67_RS02815 Protein ID WP_049270661.1
Coordinates 571143..571391 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NFK67_RS02795 (NFK67_02795) 566893..567840 + 948 WP_200103071.1 type VI secretion system baseplate subunit TssG -
NFK67_RS02800 (NFK67_02800) 567831..570332 + 2502 WP_279267407.1 type VI secretion system ATPase TssH -
NFK67_RS02805 (NFK67_02805) 570375..570848 + 474 WP_016155556.1 hypothetical protein -
NFK67_RS02810 570917..571045 + 129 WP_016155557.1 hypothetical protein -
NFK67_RS02815 (NFK67_02810) 571143..571391 + 249 WP_049270661.1 plasmid stabilization protein Antitoxin
NFK67_RS02820 (NFK67_02815) 571381..571662 + 282 WP_047414720.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NFK67_RS02825 (NFK67_02820) 571689..573653 + 1965 WP_109017766.1 type VI secretion system tip protein TssI/VgrG -
NFK67_RS02830 (NFK67_02825) 573653..574174 + 522 WP_109017767.1 hypothetical protein -
NFK67_RS02835 (NFK67_02830) 574193..574657 - 465 WP_016155562.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10974.73 Da        Isoelectric Point: 10.4466

>T248644 WP_047414720.1 NZ_CP099366:571381-571662 [Citrobacter braakii]
MTYNLEFLDVALKEWRKLSPALREQFKKKLAERLENPHVPAARLSGKLHRYKIKLRSAGYRLVYQVEDEQVVVLVIAVGR
RDGDEVYHQANRR

Download         Length: 282 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9003.28 Da        Isoelectric Point: 4.7513

>AT248644 WP_049270661.1 NZ_CP099366:571143-571391 [Citrobacter braakii]
MPFHILTKTAASITDLKRNPMGTVNAGEGEAVAILNRNEPAFYCVPPAVYAYLLELAEDAELNRISDEREGGKRIKVSLN
DL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References