Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957290..1957535 | Replicon | chromosome |
| Accession | NZ_CP099351 | ||
| Organism | Escherichia marmotae strain RHB02-E4-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957418..1957521 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957290..1957535 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ26_RS09155 | 1953843..1954505 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| NFJ26_RS09160 | 1954530..1955186 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NFJ26_RS09165 | 1955287..1955517 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| NFJ26_RS09170 | 1955656..1956030 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| NFJ26_RS09175 | 1956034..1956906 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| NFJ26_RS09180 | 1956919..1957260 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 1957290..1957535 | - | 246 | - | - | Antitoxin |
| - | 1957418..1957521 | + | 104 | - | - | Toxin |
| NFJ26_RS09185 | 1957670..1958326 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| NFJ26_RS09190 | 1958327..1958518 | - | 192 | WP_001516263.1 | YebW family protein | - |
| NFJ26_RS09195 | 1958623..1958859 | - | 237 | WP_001516264.1 | YebV family protein | - |
| NFJ26_RS09200 | 1958975..1960414 | - | 1440 | WP_010376177.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248595 NZ_CP099351:1957418-1957521 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT248595 NZ_CP099351:c1957535-1957290 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
