Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pasABC/RelE-HTH |
| Location | 3049..3523 | Replicon | plasmid unnamed3 |
| Accession | NZ_CP099347 | ||
| Organism | Escherichia marmotae strain RHB35-E2-C08 | ||
Toxin (Protein)
| Gene name | pasB | Uniprot ID | S1DZ70 |
| Locus tag | NFK54_RS24695 | Protein ID | WP_000262326.1 |
| Coordinates | 3257..3523 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | pasA | Uniprot ID | - |
| Locus tag | NFK54_RS24690 | Protein ID | WP_167780126.1 |
| Coordinates | 3049..3273 (+) | Length | 75 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK54_RS24675 (NFK54_24580) | 1820..2134 | - | 315 | WP_024139128.1 | hypothetical protein | - |
| NFK54_RS24680 (NFK54_24585) | 2235..2537 | - | 303 | WP_167780124.1 | hypothetical protein | - |
| NFK54_RS24685 (NFK54_24590) | 2642..2890 | - | 249 | WP_167780125.1 | hypothetical protein | - |
| NFK54_RS24690 (NFK54_24595) | 3049..3273 | + | 225 | WP_167780126.1 | DUF6290 family protein | Antitoxin |
| NFK54_RS24695 (NFK54_24600) | 3257..3523 | + | 267 | WP_000262326.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| NFK54_RS24700 (NFK54_24605) | 3629..3799 | - | 171 | WP_163448562.1 | hypothetical protein | - |
| NFK54_RS24705 (NFK54_24610) | 3993..4412 | - | 420 | WP_279283709.1 | Exc2 family lipoprotein | - |
| NFK54_RS24710 (NFK54_24615) | 4493..4930 | - | 438 | WP_024166928.1 | hypothetical protein | - |
| NFK54_RS24715 (NFK54_24620) | 5188..6756 | + | 1569 | WP_096129440.1 | pore-forming bacteriocin colicin E1 | - |
| NFK54_RS24720 (NFK54_24625) | 6753..6980 | - | 228 | WP_279283710.1 | colicin E1 immunity protein | - |
| NFK54_RS24725 (NFK54_24630) | 7142..7279 | + | 138 | WP_096129442.1 | colicin release lysis protein | - |
| NFK54_RS24730 (NFK54_24635) | 8166..8363 | - | 198 | WP_105453999.1 | Rop family plasmid primer RNA-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..11780 | 11780 | |
| - | flank | IS/Tn | - | - | 126..551 | 425 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|