Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1919161..1919429 | Replicon | chromosome |
| Accession | NZ_CP099338 | ||
| Organism | Escherichia fergusonii strain RHB44-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1919288..1919391 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1919161..1919429 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK94_RS09090 | 1915711..1916373 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| NFK94_RS09095 | 1916397..1917053 | - | 657 | WP_104919666.1 | carbon-nitrogen hydrolase family protein | - |
| NFK94_RS09100 | 1917160..1917390 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| NFK94_RS09105 | 1917529..1917903 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| NFK94_RS09110 | 1917906..1918778 | + | 873 | WP_000928496.1 | copper homeostasis membrane protein CopD | - |
| NFK94_RS09115 | 1918790..1919131 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1919161..1919429 | - | 269 | - | - | Antitoxin |
| - | 1919288..1919391 | + | 104 | - | - | Toxin |
| NFK94_RS09120 | 1919525..1920181 | + | 657 | Protein_1770 | protein-serine/threonine phosphatase | - |
| NFK94_RS09125 | 1920182..1920373 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NFK94_RS09130 | 1920478..1920714 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NFK94_RS09135 | 1920832..1922271 | - | 1440 | WP_002432103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1913654..1935458 | 21804 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248527 NZ_CP099338:1919288-1919391 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT248527 NZ_CP099338:c1919429-1919161 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
