Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1914875..1915143 | Replicon | chromosome |
| Accession | NZ_CP099331 | ||
| Organism | Escherichia fergusonii strain RHB44-C03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1915002..1915105 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1914875..1915143 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK96_RS09075 | 1911425..1912087 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| NFK96_RS09080 | 1912111..1912767 | - | 657 | WP_169710527.1 | carbon-nitrogen hydrolase family protein | - |
| NFK96_RS09085 | 1912874..1913104 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| NFK96_RS09090 | 1913243..1913617 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| NFK96_RS09095 | 1913620..1914492 | + | 873 | WP_169710526.1 | copper homeostasis membrane protein CopD | - |
| NFK96_RS09100 | 1914504..1914845 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1914875..1915143 | - | 269 | - | - | Antitoxin |
| - | 1915002..1915105 | + | 104 | - | - | Toxin |
| NFK96_RS09105 | 1915239..1915895 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| NFK96_RS09110 | 1915896..1916087 | - | 192 | WP_002431587.1 | YebW family protein | - |
| NFK96_RS09115 | 1916192..1916428 | - | 237 | WP_002431586.1 | YebV family protein | - |
| NFK96_RS09120 | 1916547..1917986 | - | 1440 | WP_169710525.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248491 NZ_CP099331:1915002-1915105 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT248491 NZ_CP099331:c1915143-1914875 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGTGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGTGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
