Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1961698..1961966 | Replicon | chromosome |
| Accession | NZ_CP099328 | ||
| Organism | Escherichia fergusonii strain RHB44-C21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1961825..1961928 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1961698..1961966 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL02_RS09330 | 1958248..1958910 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| NFL02_RS09335 | 1958934..1959590 | - | 657 | WP_104919666.1 | carbon-nitrogen hydrolase family protein | - |
| NFL02_RS09340 | 1959697..1959927 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| NFL02_RS09345 | 1960066..1960440 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| NFL02_RS09350 | 1960443..1961315 | + | 873 | WP_279284390.1 | copper homeostasis membrane protein CopD | - |
| NFL02_RS09355 | 1961327..1961668 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 1961698..1961966 | - | 269 | - | - | Antitoxin |
| - | 1961825..1961928 | + | 104 | - | - | Toxin |
| NFL02_RS09360 | 1962063..1962719 | + | 657 | WP_000812748.1 | protein-serine/threonine phosphatase | - |
| NFL02_RS09365 | 1962720..1962911 | - | 192 | WP_002431587.1 | YebW family protein | - |
| NFL02_RS09370 | 1963016..1963252 | - | 237 | WP_002431586.1 | YebV family protein | - |
| NFL02_RS09375 | 1963371..1964810 | - | 1440 | WP_279284391.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248470 NZ_CP099328:1961825-1961928 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT248470 NZ_CP099328:c1961966-1961698 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
