Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2848797..2848949 | Replicon | chromosome |
| Accession | NZ_CP099327 | ||
| Organism | Enterobacter ludwigii strain RHB47-SO-C03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2848811..2848914 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2848797..2848949 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL62_RS13645 (NFL62_13640) | 2845071..2846513 | + | 1443 | WP_047356857.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFL62_RS13650 (NFL62_13645) | 2846619..2846858 | + | 240 | WP_020883412.1 | YebV family protein | - |
| NFL62_RS13655 (NFL62_13650) | 2846893..2847537 | - | 645 | WP_252070007.1 | protein-serine/threonine phosphatase | - |
| NFL62_RS13660 (NFL62_13655) | 2847705..2848646 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| - | 2848797..2848949 | + | 153 | - | - | Antitoxin |
| - | 2848811..2848914 | - | 104 | - | - | Toxin |
| NFL62_RS13665 (NFL62_13660) | 2849053..2849391 | - | 339 | WP_014170622.1 | YebY family protein | - |
| NFL62_RS13670 (NFL62_13665) | 2849408..2850277 | - | 870 | WP_032678425.1 | copper homeostasis membrane protein CopD | - |
| NFL62_RS13675 (NFL62_13670) | 2850279..2850650 | - | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| NFL62_RS13680 (NFL62_13675) | 2850788..2851018 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| NFL62_RS13685 (NFL62_13680) | 2851128..2851778 | + | 651 | WP_073396013.1 | carbon-nitrogen hydrolase family protein | - |
| NFL62_RS13690 (NFL62_13685) | 2851803..2852465 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248460 NZ_CP099327:c2848914-2848811 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT248460 NZ_CP099327:2848797-2848949 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
