Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1877215..1877416 | Replicon | chromosome |
| Accession | NZ_CP099323 | ||
| Organism | Enterobacter hormaechei strain RHB45-SO-C08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1877308..1877411 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1877215..1877416 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL40_RS08885 (NFL40_08885) | 1873764..1874426 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| NFL40_RS08890 (NFL40_08890) | 1874451..1875089 | - | 639 | WP_023300434.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NFL40_RS08895 (NFL40_08895) | 1875201..1875431 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NFL40_RS08900 (NFL40_08900) | 1875569..1875940 | + | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| NFL40_RS08905 (NFL40_08905) | 1875942..1876811 | + | 870 | WP_046619433.1 | copper homeostasis membrane protein CopD | - |
| NFL40_RS08910 (NFL40_08910) | 1876828..1877166 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 1877215..1877416 | - | 202 | - | - | Antitoxin |
| NFL40_RS08915 (NFL40_08915) | 1877292..1877489 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1877308..1877411 | + | 104 | - | - | Toxin |
| NFL40_RS08920 (NFL40_08920) | 1877535..1878515 | - | 981 | WP_048966746.1 | VirK/YbjX family protein | - |
| NFL40_RS08925 (NFL40_08925) | 1878683..1879327 | + | 645 | WP_046619437.1 | protein-serine/threonine phosphatase | - |
| NFL40_RS08930 (NFL40_08930) | 1879362..1879601 | - | 240 | WP_006811010.1 | YebV family protein | - |
| NFL40_RS08935 (NFL40_08935) | 1879706..1881154 | - | 1449 | WP_202815652.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248443 NZ_CP099323:1877308-1877411 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT248443 NZ_CP099323:c1877416-1877215 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
