Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2706120..2706329 | Replicon | chromosome |
| Accession | NZ_CP099316 | ||
| Organism | Enterobacter hormaechei strain RHB44-SE-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2706133..2706236 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2706120..2706329 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL06_RS12945 (NFL06_12930) | 2702388..2703836 | + | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFL06_RS12950 (NFL06_12935) | 2703943..2704182 | + | 240 | WP_003859885.1 | YebV family protein | - |
| NFL06_RS12955 (NFL06_12940) | 2704217..2704861 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| NFL06_RS12960 (NFL06_12945) | 2705029..2706009 | + | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| NFL06_RS12965 (NFL06_12950) | 2706055..2706252 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2706120..2706329 | + | 210 | - | - | Antitoxin |
| - | 2706133..2706236 | - | 104 | - | - | Toxin |
| NFL06_RS12970 (NFL06_12955) | 2706378..2706716 | - | 339 | WP_032669635.1 | YebY family protein | - |
| NFL06_RS12975 (NFL06_12960) | 2706733..2707602 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NFL06_RS12980 (NFL06_12965) | 2707604..2707975 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| NFL06_RS12985 (NFL06_12970) | 2708113..2708343 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NFL06_RS12990 (NFL06_12975) | 2708455..2709105 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| NFL06_RS12995 (NFL06_12980) | 2709130..2709792 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2697018..2773217 | 76199 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248420 NZ_CP099316:c2706236-2706133 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT248420 NZ_CP099316:2706120-2706329 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
