Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2706118..2706327 | Replicon | chromosome |
| Accession | NZ_CP099314 | ||
| Organism | Enterobacter hormaechei strain RHB44-SE-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2706131..2706234 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2706118..2706327 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL05_RS12940 (NFL05_12925) | 2702386..2703834 | + | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFL05_RS12945 (NFL05_12930) | 2703941..2704180 | + | 240 | WP_003859885.1 | YebV family protein | - |
| NFL05_RS12950 (NFL05_12935) | 2704215..2704859 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| NFL05_RS12955 (NFL05_12940) | 2705027..2706007 | + | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| NFL05_RS12960 (NFL05_12945) | 2706053..2706250 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2706118..2706327 | + | 210 | - | - | Antitoxin |
| - | 2706131..2706234 | - | 104 | - | - | Toxin |
| NFL05_RS12965 (NFL05_12950) | 2706376..2706714 | - | 339 | WP_032669635.1 | YebY family protein | - |
| NFL05_RS12970 (NFL05_12955) | 2706731..2707600 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NFL05_RS12975 (NFL05_12960) | 2707602..2707973 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| NFL05_RS12980 (NFL05_12965) | 2708111..2708341 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NFL05_RS12985 (NFL05_12970) | 2708453..2709103 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| NFL05_RS12990 (NFL05_12975) | 2709128..2709790 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2697016..2773215 | 76199 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248407 NZ_CP099314:c2706234-2706131 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT248407 NZ_CP099314:2706118-2706327 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
