Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2836108..2836251 | Replicon | chromosome |
| Accession | NZ_CP099308 | ||
| Organism | Enterobacter roggenkampii strain RHB21-E1-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2836113..2836216 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2836108..2836251 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK08_RS13530 (NFK08_13525) | 2832365..2833807 | + | 1443 | WP_219284427.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFK08_RS13535 (NFK08_13530) | 2833913..2834152 | + | 240 | WP_008500472.1 | YebV family protein | - |
| NFK08_RS13540 (NFK08_13535) | 2834187..2834831 | - | 645 | WP_248198317.1 | protein-serine/threonine phosphatase | - |
| NFK08_RS13545 (NFK08_13540) | 2835008..2835949 | + | 942 | WP_025910080.1 | VirK/YbjX family protein | - |
| - | 2836108..2836251 | + | 144 | - | - | Antitoxin |
| - | 2836113..2836216 | - | 104 | - | - | Toxin |
| NFK08_RS13550 (NFK08_13545) | 2836355..2836693 | - | 339 | WP_008500468.1 | YebY family protein | - |
| NFK08_RS13555 (NFK08_13550) | 2836710..2837579 | - | 870 | WP_248198319.1 | copper homeostasis membrane protein CopD | - |
| NFK08_RS13560 (NFK08_13555) | 2837581..2837952 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| NFK08_RS13565 (NFK08_13560) | 2838090..2838320 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| NFK08_RS13570 (NFK08_13565) | 2838431..2839081 | + | 651 | WP_095428330.1 | carbon-nitrogen hydrolase family protein | - |
| NFK08_RS13575 (NFK08_13570) | 2839106..2839768 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248373 NZ_CP099308:c2836216-2836113 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248373 NZ_CP099308:2836108-2836251 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
