Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2248952..2249120 | Replicon | chromosome |
| Accession | NZ_CP099306 | ||
| Organism | Klebsiella michiganensis strain RHB20-SO-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2249010..2249113 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2248952..2249120 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK05_RS10735 (NFK05_10730) | 2244079..2246139 | + | 2061 | WP_143439875.1 | oligopeptidase B | - |
| NFK05_RS10740 (NFK05_10735) | 2246146..2246805 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| NFK05_RS10745 (NFK05_10740) | 2246884..2247114 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| NFK05_RS10750 (NFK05_10745) | 2247250..2247624 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| NFK05_RS10755 (NFK05_10750) | 2247629..2248498 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| NFK05_RS10760 (NFK05_10755) | 2248515..2248853 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2248952..2249120 | - | 169 | - | - | Antitoxin |
| - | 2249010..2249113 | + | 104 | - | - | Toxin |
| NFK05_RS10765 (NFK05_10760) | 2249238..2250197 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| NFK05_RS10770 (NFK05_10765) | 2250212..2252542 | - | 2331 | WP_143439874.1 | fimbria/pilus outer membrane usher protein | - |
| NFK05_RS10775 (NFK05_10770) | 2252545..2253309 | - | 765 | WP_134897814.1 | fimbria/pilus periplasmic chaperone | - |
| NFK05_RS10780 (NFK05_10775) | 2253328..2253846 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248361 NZ_CP099306:2249010-2249113 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT248361 NZ_CP099306:c2249120-2248952 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
