Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
Location | 4154072..4154752 | Replicon | chromosome |
Accession | NZ_CP099303 | ||
Organism | Citrobacter freundii strain RHB02-E1-C01 |
Toxin (Protein)
Gene name | yeeV | Uniprot ID | - |
Locus tag | NFJ16_RS19805 | Protein ID | WP_279264317.1 |
Coordinates | 4154072..4154392 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yeeU | Uniprot ID | - |
Locus tag | NFJ16_RS19810 | Protein ID | WP_186557010.1 |
Coordinates | 4154429..4154752 (-) | Length | 108 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NFJ16_RS19780 (4149806) | 4149806..4150168 | + | 363 | WP_032937671.1 | endoribonuclease SymE | - |
NFJ16_RS19785 (4150215) | 4150215..4150850 | - | 636 | WP_003837147.1 | HNH endonuclease | - |
NFJ16_RS19790 (4150991) | 4150991..4151863 | + | 873 | WP_048216872.1 | HNH endonuclease | - |
NFJ16_RS19795 (4152044) | 4152044..4153051 | - | 1008 | WP_100684815.1 | restriction endonuclease | - |
NFJ16_RS19800 (4153128) | 4153128..4153958 | - | 831 | WP_186557011.1 | DUF4942 domain-containing protein | - |
NFJ16_RS19805 (4154072) | 4154072..4154392 | - | 321 | WP_279264317.1 | TA system toxin CbtA family protein | Toxin |
NFJ16_RS19810 (4154429) | 4154429..4154752 | - | 324 | WP_186557010.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
NFJ16_RS19815 (4154765) | 4154765..4155235 | - | 471 | WP_032439573.1 | DNA repair protein RadC | - |
NFJ16_RS19820 (4155306) | 4155306..4156127 | - | 822 | WP_186557013.1 | DUF932 domain-containing protein | - |
NFJ16_RS19825 (4156226) | 4156226..4156438 | - | 213 | WP_032439571.1 | hypothetical protein | - |
NFJ16_RS19830 (4156512) | 4156512..4156868 | - | 357 | WP_223366209.1 | hypothetical protein | - |
NFJ16_RS19835 (4156941) | 4156941..4157405 | - | 465 | WP_279264318.1 | hypothetical protein | - |
NFJ16_RS19840 (4158271) | 4158271..4159725 | + | 1455 | WP_186557004.1 | YfjI family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12058.70 Da Isoelectric Point: 6.6410
>T248343 WP_279264317.1 NZ_CP099303:c4154392-4154072 [Citrobacter freundii]
MHISTVPAKVSVSSRLSPVQVWQQLLTYLLNHHYGLTLNDTPFHDDTAIQEHIEAGIVIADAVNFLVERYELVRTDRKGF
TWQDQTPFLTATDILRARRATGLINT
MHISTVPAKVSVSSRLSPVQVWQQLLTYLLNHHYGLTLNDTPFHDDTAIQEHIEAGIVIADAVNFLVERYELVRTDRKGF
TWQDQTPFLTATDILRARRATGLINT
Download Length: 321 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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