Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2031722..2031957 | Replicon | chromosome |
| Accession | NZ_CP099254 | ||
| Organism | Citrobacter freundii strain RHB09-E3-C07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2031848..2031951 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2031722..2031957 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ59_RS09665 | 2028268..2028930 | - | 663 | WP_279277994.1 | exodeoxyribonuclease X | - |
| NFJ59_RS09670 | 2028954..2029610 | - | 657 | WP_181617188.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ59_RS09675 | 2029717..2029941 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| NFJ59_RS09680 | 2030086..2030460 | + | 375 | WP_181617186.1 | CopC domain-containing protein YobA | - |
| NFJ59_RS09685 | 2030465..2031337 | + | 873 | WP_181617185.1 | copper homeostasis membrane protein CopD | - |
| NFJ59_RS09690 | 2031354..2031692 | + | 339 | WP_182269682.1 | YebY family protein | - |
| - | 2031722..2031957 | - | 236 | - | - | Antitoxin |
| - | 2031848..2031951 | + | 104 | - | - | Toxin |
| NFJ59_RS09695 | 2032106..2032747 | + | 642 | WP_182269683.1 | protein-serine/threonine phosphatase | - |
| NFJ59_RS09700 | 2032748..2032939 | - | 192 | WP_045444034.1 | YebW family protein | - |
| NFJ59_RS09705 | 2033042..2033278 | - | 237 | WP_161959030.1 | YebV family protein | - |
| NFJ59_RS09710 | 2033379..2034767 | - | 1389 | WP_197970849.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248276 NZ_CP099254:2031848-2031951 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT248276 NZ_CP099254:c2031957-2031722 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
