Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1906711..1906857 | Replicon | chromosome |
| Accession | NZ_CP099252 | ||
| Organism | Klebsiella aerogenes strain RHB11-E1-C08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1906746..1906849 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1906711..1906857 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ68_RS09170 (NFJ68_09165) | 1901820..1903880 | + | 2061 | WP_032705952.1 | oligopeptidase B | - |
| NFJ68_RS09175 (NFJ68_09170) | 1903883..1904542 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| NFJ68_RS09180 (NFJ68_09175) | 1904622..1904852 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| NFJ68_RS09185 (NFJ68_09180) | 1904987..1905361 | + | 375 | WP_047063540.1 | CopC domain-containing protein YobA | - |
| NFJ68_RS09190 (NFJ68_09185) | 1905365..1906234 | + | 870 | WP_047063541.1 | copper homeostasis membrane protein CopD | - |
| NFJ68_RS09195 (NFJ68_09190) | 1906248..1906589 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1906711..1906857 | - | 147 | - | - | Antitoxin |
| - | 1906746..1906849 | + | 104 | - | - | Toxin |
| NFJ68_RS09200 (NFJ68_09195) | 1906977..1907930 | - | 954 | WP_026612269.1 | spore coat U domain-containing protein | - |
| NFJ68_RS09205 (NFJ68_09200) | 1907943..1910267 | - | 2325 | WP_048228936.1 | fimbria/pilus outer membrane usher protein | - |
| NFJ68_RS09210 (NFJ68_09205) | 1910270..1911019 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| NFJ68_RS09215 (NFJ68_09210) | 1911037..1911555 | - | 519 | WP_045411482.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248261 NZ_CP099252:1906746-1906849 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT248261 NZ_CP099252:c1906857-1906711 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
