Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1864716..1864949 | Replicon | chromosome |
| Accession | NZ_CP099222 | ||
| Organism | Citrobacter freundii strain RHB13-SO-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1864842..1864945 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1864716..1864949 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ76_RS08735 | 1861262..1861924 | - | 663 | WP_279271826.1 | exodeoxyribonuclease X | - |
| NFJ76_RS08740 | 1861948..1862604 | - | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ76_RS08745 | 1862711..1862935 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| NFJ76_RS08750 | 1863080..1863454 | + | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| NFJ76_RS08755 | 1863459..1864331 | + | 873 | WP_181217819.1 | copper homeostasis membrane protein CopD | - |
| NFJ76_RS08760 | 1864348..1864686 | + | 339 | WP_146716933.1 | YebY family protein | - |
| - | 1864716..1864949 | - | 234 | - | - | Antitoxin |
| - | 1864842..1864945 | + | 104 | - | - | Toxin |
| NFJ76_RS08765 | 1865023..1866108 | - | 1086 | WP_279271827.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| NFJ76_RS08770 | 1866077..1866349 | - | 273 | WP_032170291.1 | excisionase | - |
| NFJ76_RS08775 | 1866413..1866655 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| NFJ76_RS08780 | 1866642..1867169 | - | 528 | WP_279271828.1 | hypothetical protein | - |
| NFJ76_RS08785 | 1867211..1868323 | - | 1113 | WP_279271981.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1859181..1940875 | 81694 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248250 NZ_CP099222:1864842-1864945 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 234 bp
>AT248250 NZ_CP099222:c1864949-1864716 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
