Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162041..2162181 | Replicon | chromosome |
| Accession | NZ_CP099217 | ||
| Organism | Citrobacter freundii strain RHB16-SO-C03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162076..2162179 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162041..2162181 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ87_RS10500 | 2158488..2159150 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| NFJ87_RS10505 | 2159174..2159830 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ87_RS10510 | 2159937..2160167 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ87_RS10515 | 2160311..2160685 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| NFJ87_RS10520 | 2160689..2161561 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| NFJ87_RS10525 | 2161582..2161920 | + | 339 | WP_279270803.1 | YebY family protein | - |
| - | 2162041..2162181 | - | 141 | - | - | Antitoxin |
| - | 2162076..2162179 | + | 104 | - | - | Toxin |
| NFJ87_RS10530 | 2162257..2163342 | - | 1086 | WP_279270804.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| NFJ87_RS10535 | 2163311..2163583 | - | 273 | WP_199950439.1 | excisionase | - |
| NFJ87_RS10540 | 2163648..2163890 | - | 243 | WP_005121071.1 | DUF4060 family protein | - |
| NFJ87_RS10545 | 2163930..2165015 | - | 1086 | WP_038641385.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2156419..2217978 | 61559 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248234 NZ_CP099217:2162076-2162179 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT248234 NZ_CP099217:c2162181-2162041 [Citrobacter freundii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
