Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1908117..1908262 | Replicon | chromosome |
| Accession | NZ_CP099140 | ||
| Organism | Klebsiella pneumoniae strain RHB28-SO-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1908153..1908255 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1908117..1908262 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK38_RS09280 (NFK38_09270) | 1903247..1905307 | + | 2061 | WP_019705169.1 | oligopeptidase B | - |
| NFK38_RS09285 (NFK38_09275) | 1905311..1905970 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NFK38_RS09290 (NFK38_09280) | 1906049..1906279 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NFK38_RS09295 (NFK38_09285) | 1906392..1906766 | + | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| NFK38_RS09300 (NFK38_09290) | 1906770..1907639 | + | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| NFK38_RS09305 (NFK38_09295) | 1907656..1907994 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1908117..1908262 | - | 146 | - | - | Antitoxin |
| - | 1908153..1908255 | + | 103 | - | - | Toxin |
| NFK38_RS09310 (NFK38_09300) | 1908630..1908773 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NFK38_RS09315 (NFK38_09305) | 1908878..1909846 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NFK38_RS09320 (NFK38_09310) | 1910003..1910656 | + | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| NFK38_RS09325 (NFK38_09315) | 1910653..1910844 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NFK38_RS09330 (NFK38_09320) | 1910942..1911181 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NFK38_RS09335 (NFK38_09325) | 1911297..1912730 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T248218 NZ_CP099140:1908153-1908255 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT248218 NZ_CP099140:c1908262-1908117 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
