Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1978512..1978655 | Replicon | chromosome |
| Accession | NZ_CP099128 | ||
| Organism | Citrobacter freundii strain RHB31-E4-C06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1978547..1978650 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1978512..1978655 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK47_RS09295 | 1974959..1975621 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| NFK47_RS09300 | 1975645..1976301 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| NFK47_RS09305 | 1976408..1976638 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFK47_RS09310 | 1976782..1977156 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| NFK47_RS09315 | 1977160..1978032 | + | 873 | WP_048232225.1 | copper homeostasis membrane protein CopD | - |
| NFK47_RS09320 | 1978053..1978391 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 1978512..1978655 | - | 144 | - | - | Antitoxin |
| - | 1978547..1978650 | + | 104 | - | - | Toxin |
| NFK47_RS09325 | 1978804..1979445 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| NFK47_RS09330 | 1979446..1979637 | - | 192 | WP_003034941.1 | YebW family protein | - |
| NFK47_RS09335 | 1979740..1979976 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFK47_RS09340 | 1980077..1981465 | - | 1389 | WP_279278930.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248205 NZ_CP099128:1978547-1978650 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248205 NZ_CP099128:c1978655-1978512 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
