Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2811502..2811735 | Replicon | chromosome |
| Accession | NZ_CP099084 | ||
| Organism | Citrobacter freundii strain RHB43-C17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2811506..2811609 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2811502..2811735 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK79_RS13740 | 2807043..2808747 | - | 1705 | Protein_2695 | DNA cytosine methyltransferase | - |
| NFK79_RS13745 | 2808744..2809001 | - | 258 | WP_181499472.1 | hypothetical protein | - |
| NFK79_RS13750 | 2809230..2809961 | - | 732 | WP_242462275.1 | DUF551 domain-containing protein | - |
| NFK79_RS13755 | 2809991..2810038 | + | 48 | WP_242462326.1 | hypothetical protein | - |
| NFK79_RS13760 | 2810102..2810374 | + | 273 | WP_071684411.1 | excisionase | - |
| NFK79_RS13765 | 2810343..2811428 | + | 1086 | WP_279264409.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2811502..2811735 | + | 234 | - | - | Antitoxin |
| - | 2811506..2811609 | - | 104 | - | - | Toxin |
| NFK79_RS13770 | 2811765..2812103 | - | 339 | WP_096756691.1 | YebY family protein | - |
| NFK79_RS13775 | 2812120..2812992 | - | 873 | WP_181498313.1 | copper homeostasis membrane protein CopD | - |
| NFK79_RS13780 | 2812997..2813371 | - | 375 | WP_096756689.1 | CopC domain-containing protein YobA | - |
| NFK79_RS13785 | 2813516..2813740 | + | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| NFK79_RS13790 | 2813847..2814503 | + | 657 | WP_096756687.1 | carbon-nitrogen hydrolase family protein | - |
| NFK79_RS13795 | 2814527..2815189 | + | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2789737..2817270 | 27533 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248192 NZ_CP099084:c2811609-2811506 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 234 bp
>AT248192 NZ_CP099084:2811502-2811735 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
