Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689575..2689775 | Replicon | chromosome |
| Accession | NZ_CP098778 | ||
| Organism | Enterobacter hormaechei strain YQ13422hy | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689579..2689682 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689575..2689775 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND013_RS12930 | 2685834..2687282 | + | 1449 | WP_206513922.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ND013_RS12935 | 2687389..2687628 | + | 240 | WP_003859885.1 | YebV family protein | - |
| ND013_RS12940 | 2687663..2688307 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| ND013_RS12945 | 2688475..2689455 | + | 981 | WP_045341271.1 | VirK/YbjX family protein | - |
| ND013_RS12950 | 2689501..2689698 | + | 198 | WP_032669636.1 | hypothetical protein | - |
| - | 2689575..2689775 | + | 201 | - | - | Antitoxin |
| - | 2689579..2689682 | - | 104 | - | - | Toxin |
| ND013_RS12955 | 2689805..2690161 | - | 357 | WP_126498642.1 | YebY family protein | - |
| ND013_RS12960 | 2690178..2691047 | - | 870 | WP_047727165.1 | copper homeostasis membrane protein CopD | - |
| ND013_RS12965 | 2691049..2691420 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| ND013_RS12970 | 2691558..2691788 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ND013_RS12975 | 2691900..2692550 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| ND013_RS12980 | 2692575..2693237 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248080 NZ_CP098778:c2689682-2689579 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT248080 NZ_CP098778:2689575-2689775 [Enterobacter hormaechei]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
