Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2538703..2538871 | Replicon | chromosome |
| Accession | NZ_CP098777 | ||
| Organism | Cronobacter sakazakii strain JXES-28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2538706..2538809 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2538703..2538871 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NES82_RS12420 (NES82_12425) | 2534080..2535522 | + | 1443 | WP_161574398.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NES82_RS12425 (NES82_12430) | 2535635..2535874 | + | 240 | WP_004386676.1 | YebV family protein | - |
| NES82_RS12430 (NES82_12435) | 2535999..2536190 | + | 192 | WP_004386675.1 | YebW family protein | - |
| NES82_RS12435 (NES82_12440) | 2536191..2536835 | - | 645 | WP_161574399.1 | metallophosphoesterase | - |
| NES82_RS12440 (NES82_12445) | 2537193..2537285 | - | 93 | WP_012124476.1 | hypothetical protein | - |
| NES82_RS12445 (NES82_12450) | 2537631..2537966 | - | 336 | WP_004386671.1 | hypothetical protein | - |
| NES82_RS12450 (NES82_12455) | 2537920..2538480 | - | 561 | WP_032968251.1 | hypothetical protein | - |
| - | 2538703..2538871 | + | 169 | - | - | Antitoxin |
| - | 2538706..2538809 | - | 104 | - | - | Toxin |
| NES82_RS12455 (NES82_12460) | 2538948..2539286 | - | 339 | WP_004386669.1 | YebY family protein | - |
| NES82_RS12460 (NES82_12465) | 2539301..2540170 | - | 870 | WP_161574400.1 | copper homeostasis membrane protein CopD | - |
| NES82_RS12465 (NES82_12470) | 2540175..2540549 | - | 375 | WP_097565730.1 | CopC domain-containing protein YobA | - |
| NES82_RS12470 (NES82_12475) | 2540696..2540926 | + | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| NES82_RS12475 (NES82_12480) | 2540998..2541660 | + | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| NES82_RS12480 (NES82_12485) | 2541657..2543720 | - | 2064 | WP_161574401.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248063 NZ_CP098777:c2538809-2538706 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT248063 NZ_CP098777:2538703-2538871 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
