Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5172176..5172321 | Replicon | chromosome |
| Accession | NZ_CP098758 | ||
| Organism | Klebsiella pneumoniae strain KP167 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5172183..5172285 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5172176..5172321 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND678_RS25075 | 5167708..5169141 | + | 1434 | WP_252109906.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ND678_RS25080 | 5169257..5169496 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ND678_RS25085 | 5169594..5169785 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ND678_RS25090 | 5169782..5170435 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| ND678_RS25095 | 5170592..5171560 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ND678_RS25100 | 5171665..5171808 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5172176..5172321 | + | 146 | - | - | Antitoxin |
| - | 5172183..5172285 | - | 103 | - | - | Toxin |
| ND678_RS25105 | 5172444..5172782 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ND678_RS25110 | 5172799..5173668 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ND678_RS25115 | 5173672..5174046 | - | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| ND678_RS25120 | 5174159..5174389 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ND678_RS25125 | 5174468..5175127 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ND678_RS25130 | 5175131..5177191 | - | 2061 | WP_032419805.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T248015 NZ_CP098758:c5172285-5172183 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT248015 NZ_CP098758:5172176-5172321 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
