Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5162417..5162562 | Replicon | chromosome |
| Accession | NZ_CP098757 | ||
| Organism | Klebsiella oxytoca strain AHC-6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5162424..5162527 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5162417..5162562 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDX50_RS24245 (NDX50_24215) | 5157690..5158208 | + | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
| NDX50_RS24250 (NDX50_24220) | 5158283..5158990 | + | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| NDX50_RS24255 (NDX50_24225) | 5158993..5161326 | + | 2334 | WP_160885941.1 | fimbria/pilus outer membrane usher protein | - |
| NDX50_RS24260 (NDX50_24230) | 5161338..5162297 | + | 960 | WP_064397726.1 | spore coat protein U domain-containing protein | - |
| - | 5162417..5162562 | + | 146 | - | - | Antitoxin |
| - | 5162424..5162527 | - | 104 | - | - | Toxin |
| NDX50_RS24265 (NDX50_24235) | 5162684..5163022 | - | 339 | WP_004103344.1 | YebY family protein | - |
| NDX50_RS24270 (NDX50_24240) | 5163039..5163908 | - | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| NDX50_RS24275 (NDX50_24245) | 5163913..5164287 | - | 375 | WP_064397728.1 | CopC domain-containing protein YobA | - |
| NDX50_RS24280 (NDX50_24250) | 5164423..5164653 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| NDX50_RS24285 (NDX50_24255) | 5164732..5165391 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| NDX50_RS24290 (NDX50_24260) | 5165398..5167458 | - | 2061 | WP_016808307.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248002 NZ_CP098757:c5162527-5162424 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT248002 NZ_CP098757:5162417-5162562 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
