Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003042..2003192 | Replicon | chromosome |
| Accession | NZ_CP098722 | ||
| Organism | Yersinia ruckeri strain NVI-11073 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2003050..2003143 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003042..2003192 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND439_RS08950 (ND439_08940) | 1998850..1999479 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND439_RS08955 (ND439_08945) | 1999686..2000372 | + | 687 | WP_004721715.1 | hypothetical protein | - |
| ND439_RS08960 (ND439_08950) | 2001113..2002258 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND439_RS08965 (ND439_08955) | 2002550..2002984 | + | 435 | WP_265316357.1 | tyrosine-type recombinase/integrase | - |
| - | 2003042..2003192 | + | 151 | - | - | Antitoxin |
| - | 2003050..2003143 | - | 94 | - | - | Toxin |
| ND439_RS08970 (ND439_08960) | 2003302..2003643 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND439_RS08975 (ND439_08965) | 2003738..2004622 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND439_RS08980 (ND439_08970) | 2004624..2005010 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND439_RS08985 (ND439_08975) | 2005415..2005930 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND439_RS08990 (ND439_08980) | 2006333..2006563 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND439_RS08995 (ND439_08985) | 2006686..2007636 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247897 NZ_CP098722:c2003143-2003050 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 151 bp
>AT247897 NZ_CP098722:2003042-2003192 [Yersinia ruckeri]
AACAAGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAA
GTTGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AACAAGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAA
GTTGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
