Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 954158..954781 Replicon chromosome
Accession NZ_CP098714
Organism Yersinia ruckeri strain NVI-1176

Toxin (Protein)


Gene name Hha Uniprot ID A0A085U5C4
Locus tag ND442_RS04320 Protein ID WP_038243726.1
Coordinates 954158..954361 (-) Length 68 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID A0A085U5C5
Locus tag ND442_RS04325 Protein ID WP_004718732.1
Coordinates 954413..954781 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ND442_RS04295 (ND442_04295) 950013..950351 + 339 WP_007886947.1 P-II family nitrogen regulator -
ND442_RS04300 (ND442_04300) 950390..951679 + 1290 WP_004718723.1 ammonium transporter AmtB -
ND442_RS04305 (ND442_04305) 951794..952657 - 864 WP_004718726.1 acyl-CoA thioesterase II -
ND442_RS04310 (ND442_04310) 953035..953349 - 315 WP_004718728.1 MGMT family protein -
ND442_RS04320 (ND442_04320) 954158..954361 - 204 WP_038243726.1 expression modulating protein YmoA Toxin
ND442_RS04325 (ND442_04325) 954413..954781 - 369 WP_004718732.1 Hha toxicity modulator TomB Antitoxin
ND442_RS04330 (ND442_04330) 955854..955991 + 138 WP_155274690.1 hypothetical protein -
ND442_RS04335 (ND442_04335) 956110..956253 - 144 WP_004718738.1 type B 50S ribosomal protein L36 -
ND442_RS04340 (ND442_04340) 956273..956527 - 255 WP_038243728.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(8-64)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 68 a.a.        Molecular weight: 8037.27 Da        Isoelectric Point: 6.4573

>T247864 WP_038243726.1 NZ_CP098714:c954361-954158 [Yersinia ruckeri]
MTKTDYLMRLRKCTTIDTLERVIEKNKYELSDDELELFYSAADHRLAELTMNKLYDKIPATVWQHVK

Download         Length: 204 bp

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 14277.08 Da        Isoelectric Point: 4.4225

>AT247864 WP_004718732.1 NZ_CP098714:c954781-954413 [Yersinia ruckeri]
MDEYSPKRHDIAQLKFLCENLYDEGIATLGDSHHGWVNDPTSAVNLQLNDLIEHIASFVMSFKIKYADEIDLCELVEEYL
DDTYTLFSSYGINDPDLRRWQKTKDRLFRLFSGEYLCALMKN

Download         Length: 369 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A085U5C4

Antitoxin

Source ID Structure
AlphaFold DB A0A085U5C5

References