Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1969572..1969718 | Replicon | chromosome |
| Accession | NZ_CP098710 | ||
| Organism | Yersinia ruckeri strain NVI-4479 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1969576..1969669 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1969572..1969718 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND012_RS08830 (ND012_08820) | 1965376..1966005 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND012_RS08835 (ND012_08825) | 1966230..1966898 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| ND012_RS08840 (ND012_08830) | 1967639..1968784 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND012_RS08845 (ND012_08835) | 1969076..1969510 | + | 435 | WP_248577356.1 | tyrosine-type recombinase/integrase | - |
| - | 1969572..1969718 | + | 147 | - | - | Antitoxin |
| - | 1969576..1969669 | - | 94 | - | - | Toxin |
| ND012_RS08850 (ND012_08840) | 1969828..1970169 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND012_RS08855 (ND012_08845) | 1970264..1971148 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND012_RS08860 (ND012_08850) | 1971150..1971536 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND012_RS08865 (ND012_08855) | 1971941..1972456 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND012_RS08870 (ND012_08860) | 1972859..1973089 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND012_RS08875 (ND012_08865) | 1973212..1974162 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247845 NZ_CP098710:c1969669-1969576 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247845 NZ_CP098710:1969572-1969718 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
