Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1486585..1486733 | Replicon | chromosome |
| Accession | NZ_CP098703 | ||
| Organism | Yersinia ruckeri strain NVI-4840 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1486634..1486727 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1486585..1486733 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND437_RS06775 (ND437_06775) | 1482141..1483091 | + | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
| ND437_RS06780 (ND437_06780) | 1483214..1483444 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND437_RS06785 (ND437_06785) | 1483847..1484362 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND437_RS06790 (ND437_06790) | 1484767..1485153 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND437_RS06795 (ND437_06795) | 1485155..1486039 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND437_RS06800 (ND437_06800) | 1486134..1486475 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1486585..1486733 | - | 149 | - | - | Antitoxin |
| - | 1486634..1486727 | + | 94 | - | - | Toxin |
| ND437_RS06805 (ND437_06805) | 1486770..1487855 | - | 1086 | WP_186368419.1 | tyrosine-type recombinase/integrase | - |
| ND437_RS06810 (ND437_06810) | 1488022..1488240 | - | 219 | WP_045844132.1 | DNA-binding transcriptional regulator | - |
| ND437_RS06815 (ND437_06815) | 1488334..1489500 | - | 1167 | WP_145522445.1 | phage late control D family protein | - |
| ND437_RS06820 (ND437_06820) | 1489497..1489982 | - | 486 | WP_038276623.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1486134..1585926 | 99792 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247819 NZ_CP098703:1486634-1486727 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT247819 NZ_CP098703:c1486733-1486585 [Yersinia ruckeri]
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
