Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040780..2040926 | Replicon | chromosome |
| Accession | NZ_CP098701 | ||
| Organism | Yersinia ruckeri strain NVI-5089 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040784..2040877 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040780..2040926 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND440_RS09225 (ND440_09220) | 2036586..2037215 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND440_RS09230 (ND440_09225) | 2037440..2038108 | + | 669 | WP_233701006.1 | hypothetical protein | - |
| ND440_RS09235 (ND440_09230) | 2038849..2039994 | + | 1146 | WP_248578632.1 | YRC family class C beta-lactamase | - |
| ND440_RS09240 (ND440_09235) | 2040071..2040718 | + | 648 | WP_248578633.1 | tyrosine-type recombinase/integrase | - |
| - | 2040780..2040926 | + | 147 | - | - | Antitoxin |
| - | 2040784..2040877 | - | 94 | - | - | Toxin |
| ND440_RS09245 (ND440_09240) | 2041036..2041377 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND440_RS09250 (ND440_09245) | 2041472..2042356 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND440_RS09255 (ND440_09250) | 2042358..2042744 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND440_RS09260 (ND440_09255) | 2043149..2043664 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND440_RS09265 (ND440_09260) | 2044067..2044297 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND440_RS09270 (ND440_09265) | 2044420..2045370 | - | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247810 NZ_CP098701:c2040877-2040784 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247810 NZ_CP098701:2040780-2040926 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
