Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1560122..1560268 | Replicon | chromosome |
| Accession | NZ_CP098694 | ||
| Organism | Yersinia ruckeri strain NVI-8270 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1560171..1560264 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1560122..1560268 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND446_RS07080 (ND446_07080) | 1555678..1556628 | + | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
| ND446_RS07085 (ND446_07085) | 1556751..1556981 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND446_RS07090 (ND446_07090) | 1557384..1557899 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND446_RS07095 (ND446_07095) | 1558304..1558690 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND446_RS07100 (ND446_07100) | 1558692..1559576 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND446_RS07105 (ND446_07105) | 1559671..1560012 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1560122..1560268 | - | 147 | - | - | Antitoxin |
| - | 1560171..1560264 | + | 94 | - | - | Toxin |
| ND446_RS07110 (ND446_07110) | 1560341..1560949 | - | 609 | WP_234056487.1 | tyrosine-type recombinase/integrase | - |
| ND446_RS07115 (ND446_07115) | 1561068..1562213 | - | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND446_RS07120 (ND446_07120) | 1562954..1563640 | - | 687 | WP_038242734.1 | hypothetical protein | - |
| ND446_RS07125 (ND446_07125) | 1563847..1564476 | - | 630 | WP_004721714.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247774 NZ_CP098694:1560171-1560264 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247774 NZ_CP098694:c1560268-1560122 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
