Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2704234..2704435 | Replicon | chromosome |
| Accession | NZ_CP098486 | ||
| Organism | Enterobacter hormaechei subsp. hormaechei strain ECC33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2704239..2704342 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2704234..2704435 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDJ97_RS12990 (NDJ97_12985) | 2700502..2701944 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NDJ97_RS12995 (NDJ97_12990) | 2702049..2702288 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NDJ97_RS13000 (NDJ97_12995) | 2702323..2702967 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NDJ97_RS13005 (NDJ97_13000) | 2703135..2704115 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NDJ97_RS13010 (NDJ97_13005) | 2704161..2704358 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2704234..2704435 | + | 202 | - | - | Antitoxin |
| - | 2704239..2704342 | - | 104 | - | - | Toxin |
| NDJ97_RS13015 (NDJ97_13010) | 2704484..2704822 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NDJ97_RS13020 (NDJ97_13015) | 2704839..2705708 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| NDJ97_RS13025 (NDJ97_13020) | 2705710..2706081 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NDJ97_RS13030 (NDJ97_13025) | 2706219..2706449 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NDJ97_RS13035 (NDJ97_13030) | 2706561..2707199 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NDJ97_RS13040 (NDJ97_13035) | 2707224..2707886 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247695 NZ_CP098486:c2704342-2704239 [Enterobacter hormaechei subsp. hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT247695 NZ_CP098486:2704234-2704435 [Enterobacter hormaechei subsp. hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
