Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 2555184..2555823 Replicon chromosome
Accession NZ_CP098480
Organism Acinetobacter sp. C32I

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag NDN13_RS12150 Protein ID WP_251115647.1
Coordinates 2555184..2555573 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag NDN13_RS12155 Protein ID WP_065343283.1
Coordinates 2555566..2555823 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NDN13_RS12130 (NDN13_12125) 2550259..2552469 - 2211 WP_251115644.1 TRAP transporter large permease subunit -
NDN13_RS12135 (NDN13_12130) 2552624..2553193 - 570 WP_251115645.1 rhombosortase -
NDN13_RS12140 (NDN13_12135) 2553271..2554410 - 1140 WP_251115646.1 hypothetical protein -
NDN13_RS12145 (NDN13_12140) 2554770..2554976 - 207 WP_016660141.1 hypothetical protein -
NDN13_RS12150 (NDN13_12145) 2555184..2555573 - 390 WP_251115647.1 hypothetical protein Toxin
NDN13_RS12155 (NDN13_12150) 2555566..2555823 - 258 WP_065343283.1 succinate dehydrogenase assembly factor 2 Antitoxin
NDN13_RS12160 (NDN13_12155) 2556012..2557184 + 1173 WP_251115648.1 acyl-CoA dehydrogenase family protein -
NDN13_RS12165 (NDN13_12160) 2557230..2557724 - 495 WP_251115649.1 DUF2059 domain-containing protein -
NDN13_RS12170 (NDN13_12165) 2557848..2559338 - 1491 WP_251115650.1 NAD(P)/FAD-dependent oxidoreductase -
NDN13_RS12175 (NDN13_12170) 2559688..2560185 - 498 WP_251115651.1 GNAT family N-acetyltransferase -
NDN13_RS12180 (NDN13_12175) 2560341..2560706 - 366 WP_004641032.1 50S ribosomal protein L17 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-126)

Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 15774.86 Da        Isoelectric Point: 10.1053

>T247688 WP_251115647.1 NZ_CP098480:c2555573-2555184 [Acinetobacter sp. C32I]
MANPAFELQYSRFAFVLQLLLFILILSVLYPLLPLWWWLLSFMLMTIAWLSFLRQPQIKRFEYLDHQDCSFEFSDPTLKI
QRRQIVKILDHQLYIALYFSQQKHKTCIIWWDQLSHAQWKKLKLRAKLA

Download         Length: 390 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10185.61 Da        Isoelectric Point: 4.3953

>AT247688 WP_065343283.1 NZ_CP098480:c2555823-2555566 [Acinetobacter sp. C32I]
MSDEMTLEERKVVYRARRGLKEIDVYFDPYVKNYYLTADADEKALFAELVDQEDPDLLDWFMEVGEPPRIELKEFILKLK
HYVHG

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References